Choose a pipeline:

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 41mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
minus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 41mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 101mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 101mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 106mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 109mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 107mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 110mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 110mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
used for deep sequencing (http://dx.doi.org/10.1126/science.1224344)
Repair method:
USER
Enrichment method:
PCR
Target amplified using:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
MiSeq (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
used for deep sequencing (http://dx.doi.org/10.1126/science.1224344)
Repair method:
USER
Enrichment method:
PCR
Target amplified using:
PCR

Sequence

Sequenced at:
MPI
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 flowcell (chemistry version 3)
Sequencing options:
Default
Output format:
fastq
Quality scale:
33

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
(10.1126/science.aar6851)
Repair method:
plus
Enrichment method:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

From Human femoral shaft, Western Siberia Ust-Ishim, sample Bone (femoral shaft) Ust-Ishim

Extracted: 130mg of bone powder from the distal end of the femur shaft (http://dx.doi.org/10.1073/pnas.1314445110)

Library

Type of material:
Genomic
Layout:
Paired
Type of library:
Shotgun
Construction:
used for deep sequencing (http://dx.doi.org/10.1126/science.1224344)
Repair method:
USER
Enrichment method:
PCR
Target amplified using:
PCR

Sequence

Sequenced at:
Leipzig
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
HiSeq2000 (chemistry version 1)
Sequencing options:
Default
Output format:
BAM
Quality scale:
Phred

Processing

Processed using:
Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b
Aligned to:
hs37d

Analysis

Analysed using Ibis/x/BWA/GATK version 1.1.69/x/0.5.10/1.3-14-g348f2b

Please cite as

Fu, Qiaomei; Li, Heng; Moorjani, Priya; Jay, Flora; M. Slepchenko, Sergey; A. Bondarev, Aleksei; L. F. Johnson, Philip; Aximu-Petri, Ayinuer; Prüfer, Kay; de Filippo, Cesare; Meyer, Matthias; Zwyns, Nicolas; C. Salazar-García, Domingo; V. Kuzmin, Yaroslav; G. Keates, Susan; A. Kosintsev, Pavel; I. Razhev, Dmitry; P. Richards, Michael; V. Peristov, Nikolai; Lachmann, Michael; Douka, Katerina; F. G. Higham, Thomas; Slatkin, Montgomery; Hublin, Jean-Jacques; Reich, David; Kelso, Janet; Bence Viola, T.; Pääbo, Svante (2014): Fu_UstIshim. Online Ancient Genome Repository. Dataset. http://dx.doi.org/10.25909/5d2574870f96b

Other Studies

This dataset doesn't appear in any other studies.

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