Choose a pipeline:

From Human skeleton, Spain 2006-11-01 Labrana1, sample Tooth (upper left third molar root) Labrana1

Extracted 2006-11-01: 0.50g of tooth powder used for extraction (http://dx.doi.org/10.1038/nature12960)

Library

Date:
2013-06-24
Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
DNA library amplification by PCR AmpliTaq Gold DNA Polymerase, and AccuPrime Pfx polymerase (both Invitrogen) (http://dx.doi.org/10.1038/nature12960)
Repair method:
None
Enrichment method:
PCR
Target amplified using:
1st round 12 cycles, 2nd round 6 cycles

Sequence

Date:
2013-06-24
Sequenced at:
National High-throughput DNA Sequencing Centre in Copenhagen
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
PHRED+33

Processing

Processed using:
AdapterRemoval/BWA/Picard/GATK version 1.5.2/0.7.3a/1.71/3.4
Aligned to:
Hg19

Analysis

Analysed using Samtools/BCFTOOLS version 0.7.3a/1.2

Please cite as

Olalde, Iñigo; Allentoft, Morten E.; Marquès-Bonet, Tomàs; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles (2015): LaBrana_Olalde2014. Online Ancient Genome Repository. Dataset. http://dx.doi.org/10.4225/55/5567C179C6CFF

Other Studies

This dataset doesn't appear in any other studies.

74 Files

Download Dataset: TAR

Powered by MyTardis