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From Human lock of hair, Australia 1923-01-01 Aboriginal_Australian, sample Hair (0.6 grams of hair) Aboriginal_Australian

Extracted 2011-01-01: (DOI: 10.1126/science.1146971)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
Libraries were built from the extract using the Rapid Library kit from Roche-454 (DOI: 10.1126/science.1211177)
Repair method:
Unknown
Enrichment method:
PCR
Target amplified using:
PCR with AmpliTaq Gold

Sequence

Sequenced at:
Copenhagen
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq2000 (chemistry version 3)
Sequencing options:
default
Output format:
fastq
Quality scale:
33

Processing

Processed using:
BWA/SAMtools and Picard/BWA alignments BEDtools version Unknown/Unknown/Unknown
Aligned to:
hg19
Average fold coverage:
6.400x

Analysis

Analysed using samtools/bcftools version 1.2

Please cite as

Rasmussen, Morten; Guo, Xiaosen; Wang, Yong; Lohmueller, Kirk E; Rasmussen, Simon; Albrechtsen, Anders; Skotte, Line; Lindgreen, Stinus; Metspalu, Mait; Jombart, Thibaut; Kivisild, Toomas; Zhai, Weiwei; Eriksson, Anders; Manica, Andrea; Orlando, Ludovic; De La Vega, Francisco M; Tridico, Silvana; Metspalu, Ene; Nielsen, Kasper; Ávila-Arcos, María C; Moreno-Mayar, J Víctor; Muller, Craig; Dortch, Joe; Gilbert, M Thomas P; Lund, Ole; Wesolowska, Agata; Karmin, Monika; Weinert, Lucy A; Wang, Bo; Li, Jun; Tai, Shuaishuai; Xiao, Fei; Hanihara, Tsunehiko; van Driem, George; Jha, Aashish R; Ricaut, François-Xavier; de Knijff, Peter; Migliano, Andrea B; Romero, Irene Gallego; Kristiansen, Karsten; Lambert, David M; Brunak, Søren; Forster, Peter; Brinkmann, Bernd; Nehlich, Olaf; Bunce, Michael; Richards, Michael; Gupta, Ramneek; Bustamante, Carlos D; Krogh, Anders; Foley, Robert A; Lahr, Marta M; Balloux, Francois; Sicheritz-Pontén, Thomas; Villems, Richard; Nielsen, Rasmus; Wang, Jun; Willerslev, Eske (2011): Rasmussen_AusAboriginal. Online Ancient Genome Repository. Dataset. http://dx.doi.org/10.4225/55/57819B64684D0

Other Studies

This dataset doesn't appear in any other studies.

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