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From Human human hair tuft, Greenland 1986-01-01 Palaeo-Eskimo, sample Hair (human hair tuft) Palaeo-Eskimo

Extracted: Three similarly sized cuts of hair (1.5-2g) used for extraction (http://dx.doi.org/ 10.1038/nature08835)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
Extracted DNA built into 12 Illumina index libraries, following manufactures protocol, but without DNA fragmentation (http://dx.doi.org/ 10.1038/nature08835)
Repair method:
unknown
Enrichment method:
Other
Target amplified using:
Phusion polymerase

Sequence

Sequenced at:
Beijing Genomics Institute, Shenzhen
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina GAII (chemistry version 3)
Sequencing options:
default
Output format:
fastq
Quality scale:
33

Processing

Processed using:
Illumina Pipeline version 1.4
Aligned to:
hg19
Average fold coverage:
20.000x
Percentage coverage:
79.000

Analysis

Analysed using samtools/bcftools version 1.2

Please cite as

Rasmussen, Morten; Li, Yingrui; Lindgreen, Stinus; Pedersen, Jakob Skou; Albrechtsen, Anders; Moltke, Ida; Metspalu, Mait; Metspalu, Ene; Kivisild, Toomas; Gupta, Ramneek; Bertalan, Marcelo; Nielsen, Kasper; Gilbert, M Thomas P; Wang, Yong; Raghavan, Maanasa; Campos, Paula F; Munkholm Kamp, Hanne; Wilson, Andrew S; Gledhill, Andrew; Tridico, Silvana; Bunce, Michael; Lorenzen, Eline D; Binladen, Jonas; Guo, Xiaosen; Zhao, Jing; Zhang, Xiuqing; Zhang, Hao; Li, Zhuo; Chen, Minfeng; Orlando, Ludovic; Kristiansen, Karsten; Bak, Mads; Tommerup, Niels; Bendixen, Christian; Pierre, Tracey L; Grønnow, Bjarne; Meldgaard, Morten; Andreasen, Claus; Fedorova, Sardana A; Osipova, Ludmila P; Higham, Thomas FG; Bronk Ramsey, Christopher; v. O. Hansen, Thomas; Nielsen, Finn C; Crawford, Michael H; Brunak, Søren; Sicheritz-Pontén, Thomas; Villems, Richard; Nielsen, Rasmus; Krogh, Anders; Wang, Jun; Willerslev, Eske (2010): Rasmussen_PaeleoEskimo. Online Ancient Genome Repository. Dataset. http://dx.doi.org/10.4225/55/57819B1F0DAF1

Other Studies

This dataset doesn't appear in any other studies.

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