Dataset
malta_boy
From the study: Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
1 4 46.6 GB
Choose a pipeline:
From Human humerus, Russia MA-1, sample Bone (humerus) MA-1
Extracted: 149 mg of bone powder from a humerus from MA-1 (DOI: 10.1002/(SICI)1096-8644(199804)105:4<539::AID-AJPA10>3.0.CO;2-1)
Library
- Type of material:
- Genomic
- Layout:
- Single
- Type of library:
- Shotgun
- Construction:
- DNA extractions and library constructions performed at Centre for GeoGenetics, Copenhagen (http://dx.doi.org/10.1038/nature12736)
- Repair method:
- user
- Enrichment method:
- PCR
Sequence
- Sequenced at:
- Danish National High- Throughput DNA Sequencing Centre
- Sequencing method:
- WGS (Whole genome shotgun sequencing)
- Sequencer used:
- llumina HiSeq 2000 (chemistry version 3)
- Sequencing options:
- Default
- Output format:
- fastq
- Quality scale:
- 33
Processing
- Processed using:
- AdapterRemoval/BWA/Illumina software CASAVA/pysam/BedTools version 1.2/0.5.9/1.2/1.8.2/Unknown/Unknown
- Aligned to:
- hg19
From Human humerus, Russia AG-2, sample Bone (humerus) AG-2
Extracted: (DOI: 10.1002/(SICI)1096-8644(199804)105:4<539::AID-AJPA10>3.0.CO;2-1)
Library
- Type of material:
- Genomic
- Layout:
- Single
- Type of library:
- Shotgun
- Construction:
- DNA extractions and library constructions performed at Centre for GeoGenetics, Copenhagen (http://dx.doi.org/10.1038/nature12736)
- Repair method:
- user
- Enrichment method:
- PCR
Sequence
- Sequenced at:
- Danish National High- Throughput DNA Sequencing Centre
- Sequencing method:
- WGS (Whole genome shotgun sequencing)
- Sequencer used:
- llumina HiSeq 2000 (chemistry version 3)
- Sequencing options:
- Default
- Output format:
- fastq
- Quality scale:
- 33
Processing
- Processed using:
- AdapterRemoval/BWA/Illumina software CASAVA/pysam/BedTools version 1.2/0.5.9/1.2/1.8.2/Unknown/Unknown
- Aligned to:
- hg19
Analysis
Analysed using samtools/bcftools version 1.2/1.2
Please cite as
Raghavan, Maanasa;
Skoglund, Pontus;
Graf, Kelly E;
Metspalu, Mait;
Albrechtsen, Anders;
Moltke, Ida;
Rasmussen, Simon;
Stafford Jr, Thomas W;
Orlando, Ludovic;
Metspalu, Ene;
Karmin, Monika;
Tambets, Kristiina;
Rootsi, Siiri;
Mägi, Reedik;
Campos, Paula F;
Balanovska, Elena;
Balanovsky, Oleg;
Khusnutdinova, Elza;
Litvinov, Sergey;
Osipova, Ludmila P;
Fedorova, Sardana A;
Voevoda, Mikhail I;
DeGiorgio, Michael;
Sicheritz-Ponten, Thomas;
Brunak, Søren;
Demeshchenko, Svetlana;
Kivisild, Toomas;
Villems, Richard;
Nielsen, Rasmus;
Jakobsson, Mattias;
Willerslev, Eske
(2014):
malta_boy.
Online Ancient Genome Repository.
Dataset.
http://dx.doi.org/10.4225/55/578192477F945
Other Studies
This dataset doesn't appear in any other studies.
Powered by MyTardis