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From Human humerus, Russia MA-1, sample Bone (humerus) MA-1

Extracted: 149 mg of bone powder from a humerus from MA-1 (DOI: 10.1002/(SICI)1096-8644(199804)105:4<539::AID-AJPA10>3.0.CO;2-1)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
DNA extractions and library constructions performed at Centre for GeoGenetics, Copenhagen (http://dx.doi.org/10.1038/nature12736)
Repair method:
user
Enrichment method:
PCR

Sequence

Sequenced at:
Danish National High- Throughput DNA Sequencing Centre
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
llumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
fastq
Quality scale:
33

Processing

Processed using:
AdapterRemoval/BWA/Illumina software CASAVA/pysam/BedTools version 1.2/0.5.9/1.2/1.8.2/Unknown/Unknown
Aligned to:
hg19

From Human humerus, Russia AG-2, sample Bone (humerus) AG-2

Extracted: (DOI: 10.1002/(SICI)1096-8644(199804)105:4<539::AID-AJPA10>3.0.CO;2-1)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
DNA extractions and library constructions performed at Centre for GeoGenetics, Copenhagen (http://dx.doi.org/10.1038/nature12736)
Repair method:
user
Enrichment method:
PCR

Sequence

Sequenced at:
Danish National High- Throughput DNA Sequencing Centre
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
llumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
fastq
Quality scale:
33

Processing

Processed using:
AdapterRemoval/BWA/Illumina software CASAVA/pysam/BedTools version 1.2/0.5.9/1.2/1.8.2/Unknown/Unknown
Aligned to:
hg19

Analysis

Analysed using samtools/bcftools version 1.2/1.2

Please cite as

Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E; Metspalu, Mait; Albrechtsen, Anders; Moltke, Ida; Rasmussen, Simon; Stafford Jr, Thomas W; Orlando, Ludovic; Metspalu, Ene; Karmin, Monika; Tambets, Kristiina; Rootsi, Siiri; Mägi, Reedik; Campos, Paula F; Balanovska, Elena; Balanovsky, Oleg; Khusnutdinova, Elza; Litvinov, Sergey; Osipova, Ludmila P; Fedorova, Sardana A; Voevoda, Mikhail I; DeGiorgio, Michael; Sicheritz-Ponten, Thomas; Brunak, Søren; Demeshchenko, Svetlana; Kivisild, Toomas; Villems, Richard; Nielsen, Rasmus; Jakobsson, Mattias; Willerslev, Eske (2014): malta_boy. Online Ancient Genome Repository. Dataset. http://dx.doi.org/10.4225/55/578192477F945

Other Studies

This dataset doesn't appear in any other studies.

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