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From Denisovan small fragment of finger bone, Russian Federation DenisovaPhalanx, sample Bone (40mg of bone) DenisovaPhalanx

Extracted: (http://dx.doi.org/10.1126/science.1224344)

Library

Type of material:
Other
Layout:
Single
Type of library:
Shotgun
Construction:
Single stranded lib prep (http://dx.doi.org/10.1126/science.1224344)
Repair method:
UDG
Enrichment method:
PCR

Sequence

Sequenced at:
MPI-EVA
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina Genome Analyzer IIx (chemistry version 4)
Sequencing options:
Custom
Output format:
FASTQ
Quality scale:
Phred33

Processing

Processed using:
GATK IndelRealigner version 1.3-17-gc62082b
Aligned to:
hg19_1000g

Analysis

Analysed using GATK UnifiedGenotyper version 4911b910

Please cite as

Meyer, Matthias; Kircher, Martin; Gansauge, Marie-Theres; Li, Heng; Racimo, Fernando; Mallick, Swapan; Schraiber, Joshua G; Jay, Flora; Prüfer, Kay; de Filippo, Cesare; Sudmant, Peter H; Alkan, Can; Fu, Qiaomei; Do, Ron; Rohland, Nadin; Tandon, Arti; Siebauer, Michael; Green, Richard E; Bryc, Katarzyna; Briggs, Adrian W; Stenzel, Udo; Dabney, Jesse; Shendure, Jay; Kitzman, Jacob; Hammer, Michael F; Shunkov, Michael V; Derevianko, Anatoli P; Patterson, Nick; Andrés, Aida M; Eichler, Evan E; Slatkin, Montgomery; Reich, David; Kelso, Janet; Pääbo, Svante (2012): Denisovan_Phalanx_Dataset. Online Ancient Genome Repository. Dataset. http://dx.doi.org/10.4225/55/578421E2A8E37

Other Studies

This dataset doesn't appear in any other studies.

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