Choose a pipeline:

From Human Petrous bone, Hungary KO1, sample Bone (Petrous bone) KO1

Extracted: 0.30 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary KO2, sample Bone (Petrous bone) KO2

Extracted: 0.32 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary NE1, sample Bone (Petrous bone) NE1

Extracted: 0.35 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary NE2, sample Bone (Petrous bone) NE2

Extracted: 0.35 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary NE3, sample Bone (Petrous bone) NE3

Extracted: 0.24 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary NE4, sample Bone (Petrous bone) NE4

Extracted: 0.35 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary NE5, sample Bone (Petrous bone) NE5

Extracted: 0.33 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary NE6, sample Bone (Petrous bone) NE6

Extracted: 0.30 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary NE7, sample Bone (Petrous bone) NE7

Extracted: 0.30 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary CO1, sample Bone (Petrous bone) CO1

Extracted: 0.31 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary BR1, sample Bone (Petrous bone) BR1

Extracted: 0.30 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

From Human Petrous bone, Hungary IR1, sample Bone (Petrous bone) IR1

Extracted: 0.35 g bone powder (http://dx.doi.org/10.1038/ncomms6257)

Library

Type of material:
Genomic
Layout:
Single
Type of library:
Shotgun
Construction:
(http://dx.doi.org/10.1038/ncomms6257)
Repair method:
none
Enrichment method:
PCR

Sequence

Sequenced at:
Beijing Genomics Institute, China
Sequencing method:
WGS (Whole genome shotgun sequencing)
Sequencer used:
Illumina HiSeq 2000 (chemistry version 3)
Sequencing options:
Default
Output format:
FASTQ
Quality scale:
33

Processing

Processed using:
cutadapt/seqtk/BWA/samtools/picard version 1.3/x/0.7.5a-r405/0.1.19-44428cd/x
Aligned to:
hg19

Analysis

Analysed using samtools/bcftools version 1.2/1.2

Please cite as

Gamba, Cristina; Jones, Eppie R; Teasdale, Matthew D; McLaughlin, Russell L; Gonzalez-Fortes, Gloria; Mattiangeli, Valeria; Domboróczki, László; Kővári, Ivett; Pap, Ildikó; Anders,Alexandra; Whittle, Alasdair; Dani, János; Raczky, Pál; Higham, Thomas FG; Hofreiter, Michael; Bradley, Daniel G; Pinhasi, Ron (2014): AncientHungarians. Online Ancient Genome Repository. Dataset. http://dx.doi.org/10.4225/55/5789A56DB5FB5

Other Studies

This dataset doesn't appear in any other studies.

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